PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14002_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 74aa    MW: 7866.38 Da    PI: 9.0834
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14002_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-113061132
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                                         rg+WT+eEd ll+++++ +G g+W++ a++ g
  cra_locus_14002_iso_1_len_341_ver_3 30 RGPWTAEEDTLLIHYIASHGEGRWNLLAKRSG 61
                                         89***************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9972574IPR017930Myb domain
SuperFamilySSF466894.59E-92761IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-112861IPR009057Homeodomain-like
PfamPF002492.2E-93061IPR001005SANT/Myb domain
CDDcd001675.79E-83262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
XSSSSSSLSK TTSSSSSSDD DGTGAGGLRR GPWTAEEDTL LIHYIASHGE GRWNLLAKRS  60
GNPIKPILLN LYKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094742.17e-18Transcription factor
TrEMBLW9QXC48e-18W9QXC4_9R
STRINGPOPTR_0015s03770.16e-15(Populus trichocarpa)